¶ BioAnalyze HPC
BioAnalyze HPC is a templated HPC system based off of AWS ParallelCluster, with lots of features including for Bioinformatics and Genomics Analysis.
BioAnalyze is an Open Source framework for deploying Bioinformatics Analysis Infrastructure on AWS.
¶ Overview
¶ System at a Glance
At it’s base BioAnalyze is a templated SLURM HPC cluster. It supplies tools and frameworks that are common to Bioinformatics work. Each tool or framework comes preconfigured to take advantage of your HPC.
¶ Backend
- SLURM Cluster backed by AWS PCluster
- Multiple Queues
- Singularity
- Docker
- Nextflow
- Prefect
Elastic File Storage (EFS) storage for /apps and /scratch
Lustre (FSX) storage for /fastscratch
¶ Front End Cluster Portal - User Interfaces
The Jupyterhub interface has it’s own web interface, but that interface is backed by the cluster. If you are logged into the JupyterHub interface you are also logged into the cluster.
- Jupyterhub interface (backed by SLURM)
- Dask Gateway
- RStudio
- Visual Studio Code
¶ Show Case
Jupyterhub Spawner
PCluster Helper Libraries
Deploy all the Bioinformatics Related Things!
On AWS!